Re-organize the source tree as a monorepo mirroring the FHS
The source layout now mirrors the runtime filesystem hierarchy
(docs/danos-file-system-hierarchy-FSH.md): what lives under system/ in the
source is what a running danos represents under /system. Each service and
driver is a sub-project directory that is its own Zig module — cross-project
references go by module name, never by a path into another project's files.
Moves (all git mv, history preserved):
- src/ -> system/ (danos internals; the self-representation)
root.zig -> danos.zig (the kernel<->user contract module)
kernel/arch/ -> kernel/architecture/ (arch -> architecture)
device/ -> devices/ (what /system/devices reflects)
boot/ -> /boot (the loaders, top level)
- sbin/ -> split by role:
init, vfs -> system/services/<name>/<name>.zig
hpetd, busd -> system/drivers/<name>/<name>.zig
vfs-test -> system/services/vfs/vfs-test.zig (inside the vfs project)
- lib/ -> library/runtime/ (room for other libraries beside runtime)
The VFS wire protocol becomes its own module, system/services/vfs/protocol.zig
("vfs-protocol"): the vfs sub-project exposes its interface, and the runtime's
file layer imports it by name. First instance of the "protocol module" pattern
(docs/driver-model.md); usb/block will expose theirs the same way.
Also: fix a naming-standard violation in the protocol — Op -> Operation (and
req -> request, _pad -> _padding). Docs updated: /system/services added to the
FHS doc, a repository-layout section added to the docs index, and stale source
paths swept across comments and docs.
Runtime boot paths are unchanged (the bootloader still loads /sbin/init);
aligning the runtime filesystem to the FHS is a separate follow-up. Suite 35/35
plus host tests green.
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@@ -1,6 +1,6 @@
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# SysV: the kernel's calling convention
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Several places in danos say "the kernel is SysV" — most visibly `src/root.zig`:
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Several places in danos say "the kernel is SysV" — most visibly `system/danos.zig`:
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```zig
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pub const kernel_abi: std.builtin.CallingConvention = .{ .x86_64_sysv = .{} };
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@@ -52,7 +52,7 @@ argument arrives in **RCX**, not RDI.
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danos's two binaries default to different conventions:
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- `src/boot/efi.zig` is built for the UEFI target, so its default C convention is
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- `boot/efi.zig` is built for the UEFI target, so its default C convention is
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Microsoft x64 (first argument → RCX).
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- The kernel is freestanding, so its convention is SysV (first argument → RDI).
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