On a legacy-free board COM1 is decoded but has no live UART: its LSR reads 0x00, so the transmit-holding-empty bit never sets and writeByte spun its full 100k-iteration guard on every logged byte (~15ms/byte x ~3.7k bytes to 'initialised' ~= 57s). QEMU always has a working UART, so this only bit real hardware; the boot log survived via log.ramSink.
- probe() loopback-tests the UART in init(); write() is a no-op when absent, so a dead port costs nothing per byte
- guard cut 100k -> 5k (backstop for a live-but-stalled UART only)
- serialPresent() + a boot line making the absent-UART case visible
The source layout now mirrors the runtime filesystem hierarchy
(docs/danos-file-system-hierarchy-FSH.md): what lives under system/ in the
source is what a running danos represents under /system. Each service and
driver is a sub-project directory that is its own Zig module — cross-project
references go by module name, never by a path into another project's files.
Moves (all git mv, history preserved):
- src/ -> system/ (danos internals; the self-representation)
root.zig -> danos.zig (the kernel<->user contract module)
kernel/arch/ -> kernel/architecture/ (arch -> architecture)
device/ -> devices/ (what /system/devices reflects)
boot/ -> /boot (the loaders, top level)
- sbin/ -> split by role:
init, vfs -> system/services/<name>/<name>.zig
hpetd, busd -> system/drivers/<name>/<name>.zig
vfs-test -> system/services/vfs/vfs-test.zig (inside the vfs project)
- lib/ -> library/runtime/ (room for other libraries beside runtime)
The VFS wire protocol becomes its own module, system/services/vfs/protocol.zig
("vfs-protocol"): the vfs sub-project exposes its interface, and the runtime's
file layer imports it by name. First instance of the "protocol module" pattern
(docs/driver-model.md); usb/block will expose theirs the same way.
Also: fix a naming-standard violation in the protocol — Op -> Operation (and
req -> request, _pad -> _padding). Docs updated: /system/services added to the
FHS doc, a repository-layout section added to the docs index, and stale source
paths swept across comments and docs.
Runtime boot paths are unchanged (the bootloader still loads /sbin/init);
aligning the runtime filesystem to the FHS is a separate follow-up. Suite 35/35
plus host tests green.
Daniel Samson